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Bibliography

1
Liu X, Sivaganesan S, Yeung KY, Guo J, Bumgarner RE, Medvedovic M: Context- specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset. Bioinformatics 2006, 22:1737-1744.

2
Freudenberg JM, Joshi VK, Hu Z, Medvedovic M: CLEAN: CLustering Enrichment ANalysis. BMC Bioinformatics 2009, 10:234.

3
Sartor MA, Leikauf GD, Medvedovic M: LRpath: A logistic regression approach for identifying enriched biological groups in gene expression data 2. Bioinformatics 2008.

4
Medvedovic M, Gear R, Freudenberg JM, Schneider J, Bornschein R, Yan M, Mistry MJ, Hendrix H, Karyala S, Halbleib D et al.: Influence of Fatty Acid Diets on Gene Expression in Rat Mammary Epithelial Cells. Physiol Genomics 2009.

5
Miller LD, Smeds J, George J, Vega VB, Vergara L, Ploner A, Pawitan Y, Hall P, Klaar S, Liu ET et al.: From The Cover: An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival. PNAS 2005, 102:13550-13555.

6
Fournier MV, Martin KJ, Kenny PA, Xhaja K, Bosch I, Yaswen P, Bissell MJ: Gene Expression Signature in Organized and Growth-Arrested Mammary Acini Predicts Good Outcome in Breast Cancer. Cancer Res 2006, 66:7095-7102.

7
Herschkowitz J, Simin K, Weigman V, Mikaelian I, Usary J, Hu Z, Rasmussen K, Jones L, Assefnia S, Chandrasekharan S et al.: Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors. Genome Biology 2007, 8:R76.

8
Moggs JG, Murphy TC, Lim FL, Moore DJ, Stuckey R, Antrobus K, Kimber I, Orphanides G: Anti-proliferative effect of estrogen in breast cancer cells that re- express ER{alpha} is mediated by aberrant regulation of cell cycle genes. J Mol Endocrinol 2005, 34:535-551.

9
Chen X, Xu H, Yuan P, Fang F, Huss M, Vega VB, Wong E, Orlov YL, Zhang W, Jiang J et al.: Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells. Cell 2008, 133:1106-1117.

10
Xu X, Bieda M, Jin VX, Rabinovich A, Oberley MJ, Green R, Farnham PJ: A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members. Genome Res 2007, 17:1550-1561.

11
Kalma Y, Marash L, Lamed Y, Ginsberg D: Expression analysis using DNA microarrays demonstrates that E2F-1 up-regulates expression of DNA replication genes including replication protein A2 3. Oncogene 2001, 20:1379-1387.

12
Mikkelsen TS, Hanna J, Zhang X, Ku M, Wernig M, Schorderet P, Bernstein BE, Jaenisch R, Lander ES, Meissner A: Dissecting direct reprogramming through integrative genomic analysis 2. Nature 2008, 454:49-55.